PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g172800.t1.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 1083aa    MW: 101223 Da    PI: 6.9273
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g172800.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.11.7e-14777803127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ykte Cr +++tG C+yG++C+FaHgp
  Cre03.g172800.t1.2 777 YKTEMCRSWQETGACRYGSKCQFAHGP 803
                         9************************96 PP

2zf-CCCH35.91.3e-11815839125
                         --S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                         ykte Cr+f++tG C+yG+rC+F+H
  Cre03.g172800.t1.2 815 YKTEHCRTFSATGVCQYGNRCRFIH 839
                         9************************ PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.0E-19772808IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-10775808IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-8776803IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.197776804IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10777803IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-12810840IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-8810841IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915814842IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-6814841IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8815839IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1083 aa     Download sequence    Send to blast
MPQLTKPAAT AATDSGSADP PTNSLPLAAA APAADAGGGA GDRGDDDYGG GGISLRPSWG  60
RAVTRQAAVA AAPNAPSAAI FSNGGGSGGG AQMPPAAAAP AAAEPAGPLR HTDSKLRSHP  120
FGASGGDITT GSSSGSGSGS EGSGGAAAAG HPRNRSASLR ASLDQPMWSP PLQPQPQPYL  180
QARPSSAAAA ADRTSTPPLP PRYPTSAEAA AATAAARELL DAGGTFPLHI LGGFGSGAGV  240
GSDGPDSDGE GGHALSETSL GSGAGGSHVF RGVGGTSPFH AAAAPASAGG GLGGAGGSRG  300
SLLSGPYFSY GSPLTSGPAN AMDSGGAAAG GGDGAGGFGG AGTQGFFSPS LLSQNPSFVS  360
VKGNDGGGGG GGGPGGGGGG MLLVVDASTG LVVGTAQQQP QQLQGGRDGA STPGSLAPST  420
PGVLTGGGFG GFAGGGHTPA TSVPGSLRSS LDLPRSPLAP MIGGAGGGRS SGEGRGQTAE  480
PAGPVAGAAA TADADAARAA LSALLARGGS GAVDISSLVE AAGLSMAPLQ GLPGGGGSGS  540
GGDVSMSAVL AAVLQQQAAA AAGMGSGMDD ASDSAAVAMA SGLEPTMAAT VLNEALAANG  600
GGLSFNVLLA LAQAANGAVG SSSNGGGAAT AAAAADAERA MALQAAMAAA AAATGPAAAA  660
GLMPAPPAVA LMTPLGTPAR GPPPGFIGGA GGANSQLLGG LPPPSPGFAL RSPAAAAGIN  720
SPSWRSSVPA GGSIGSSSLL GSPGPRTTQA AAAMAPQGLL AALGSPRGTG PKHNTLYKTE  780
MCRSWQETGA CRYGSKCQFA HGPEELRTVV RHPKYKTEHC RTFSATGVCQ YGNRCRFIHT  840
APPGAAGGTP RPTLLGPGVG PCSLLGSPHS SEHSGSDGGG GGAGGAGAAL QGNAESLGAT  900
LWGRAGDGGM QNQALPPAAA CLLSPARTSF FAASPTARGP MRHSALFSSP PYKMSRLHPP  960
VDAAGGGGPA QEEASPMPQH TLPHLPATPA AGGTPSSADA GGGSGAASRG VGFLLGGDGG  1020
GGRNGSSRGG GVAMQLFSAF GGAGGGLGGG GGSGNGDAVK PLAGPAPQSV GGPGEDAAMV  1080
DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-28774841168Butyrate response factor 2
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g172800.t1.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0877260.0AC087726.36 Chlamydomonas reinhardtii clone cr-40a20, complete sequence.
GenBankAC0904330.0AC090433.10 Chlamydomonas reinhardtii clone cr-19b23, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.17e-24C3H family protein